BackgroundConfigAsyncJobExecutionActor : Status change from - to WaitingForReturnCodeĪt that point it stalls forever. BackgroundConfigAsyncJobExecutionActor : job id: 31514 Not triggering log of token queue status. BackgroundConfigAsyncJobExecutionActor : executing: /bin/bash /Users/mcrepeau/working/cromwell/cromwell-executions/myWorkflow/b9e4ed10-1e46-4b1f-b5b4-9075fa736f3a/call-myTask/execution/script BackgroundConfigAsyncJobExecutionActor : echo "hello world" Assigned new job execution tokens to the following groups: b9e4ed10: 1 WorkflowExecutionActor-b9e4ed10-1e46-4b1f-b5b4-9075fa736f3a : Starting myWorkflow.myTask MaterializeWorkflowDescriptorActor : Call-to-Backend assignments: myWorkflow.myTask -> Local MaterializeWorkflowDescriptorActor : Parsing workflow as WDL draft-2 WorkflowStoreHeartbeatWriteActor configured to flush with batch size 10000 and process rate 2 minutes. Retrieved 1 workflows from the WorkflowStoreActor WorkflowManagerActor Successfully started WorkflowActor-b9e4ed10-1e46-4b1f-b5b4-9075fa736f3a WorkflowManagerActor Starting workflow b9e4ed10-1e46-4b1f-b5b4-9075fa736f3a SingleWorkflowRunnerActor: Workflow submitted b9e4ed10-1e46-4b1f-b5b4-9075fa736f3a Unspecified type (Unspecified version) workflow b9e4ed10-1e46-4b1f-b5b4-9075fa736f3a submitted SingleWorkflowRunnerActor: Submitting workflow JobExecutionTokenDispenser - Distribution rate: 50 per 1 seconds. '-api-queries-per-100-seconds' is being deprecated, use '' instead (see nf)
CallCacheWriteActor configured to flush with batch size 100 and process rate 3 seconds. WriteMetadataActor configured to flush with batch size 200 and process rate 5 seconds.
KvWriteActor configured to flush with batch size 200 and process rate 5 seconds. Metadata summary refreshing every 1 second. Running with database db.url = jdbc:hsqldb:mem:fe4f4034-7ee8-427b-9719-579ee2f6618f shutdown=false hsqldb.tx=mvcc Running migration RenameWorkflowOptionsInMetadata with a read batch size of 100000 and a write batch size of 100000 The following is the complete output: Running with database db.url = jdbc:hsqldb:mem:4b62140f-ee89-4787-b6e5-7d025fe17d5d shutdown=false hsqldb.tx=mvcc But in the terminal window, I never get my command line back.
I followed the instructions exactly, and it does seem to be working in the sense that it produces a directory structure, and a few levels down in that directory structure there is a file "stdout" that contains the words "hello world". Unfortunately it isn't working quite as advertised. I thought I'd learn to use Cromwell, so I started with the 5-minute introduction tutorial found here: I am using Cromwell version 55 on a MacBook Pro running OS 10.15.7 (Catalina).
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